{
    "general": {
        "date": "2024-10-25 10:22:24",
        "title": "roussos_2024.infant.Endothelial",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.2826897175038987,
                "fri_blacklist": 0.022890496591104717,
                "fri_prom": 0.13301079414902203,
                "fri_enh": 0.23730022543024112
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 96446,
                "Np": 0,
                "N_opt": 96446,
                "N_consv": 96446,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 25507,
                "Np": 0,
                "N_opt": 25507,
                "N_consv": 25507,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297557
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 217.0,
                "75_pct": 314.0,
                "max_size": 2331.0,
                "mean": 297.9842013462967
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 656.0,
                "50_pct": 861.0,
                "75_pct": 1063.0,
                "max_size": 2331.0,
                "mean": 869.1021288273807
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 237.0,
                "50_pct": 354.0,
                "75_pct": 663.0,
                "max_size": 2331.0,
                "mean": 487.5388507558634
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.28144270719723563
                },
                "rep1-pr1": {
                    "frip": 0.307134955684755
                },
                "rep1-pr2": {
                    "frip": 0.30645147520309884
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1648954493850353
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.08762203385313745
                }
            }
        }
    }
}
