{
    "general": {
        "date": "2024-10-25 14:26:22",
        "title": "roussos_2024.infant.Astrocyte",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.2563797365987726,
                "fri_blacklist": 0.018321871304440004,
                "fri_prom": 0.11232376042475088,
                "fri_enh": 0.23431125250865412
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 212574,
                "Np": 0,
                "N_opt": 212574,
                "N_consv": 212574,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 123964,
                "Np": 0,
                "N_opt": 123964,
                "N_consv": 123964,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 294954
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 309.0,
                "50_pct": 612.0,
                "75_pct": 1104.0,
                "max_size": 3773.0,
                "mean": 751.3617784468087
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 835.0,
                "50_pct": 1155.0,
                "75_pct": 1468.0,
                "max_size": 3773.0,
                "mean": 1180.3620002581395
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 528.0,
                "50_pct": 861.0,
                "75_pct": 1268.0,
                "max_size": 3773.0,
                "mean": 934.9580099165468
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.20865380983261658
                },
                "rep1-pr1": {
                    "frip": 0.20236366701699463
                },
                "rep1-pr2": {
                    "frip": 0.2024612640509305
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.18915589355673887
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1569072680386432
                }
            }
        }
    }
}
