{
    "general": {
        "date": "2024-10-25 12:03:17",
        "title": "roussos_2024.elderly.OPC",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5085462204777812,
                "fri_blacklist": 0.007384483291603769,
                "fri_prom": 0.3111213806754243,
                "fri_enh": 0.2772851991580287
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 213369,
                "Np": 0,
                "N_opt": 213369,
                "N_consv": 213369,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 126996,
                "Np": 0,
                "N_opt": 126996,
                "N_consv": 126996,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298900
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 217.0,
                "50_pct": 494.0,
                "75_pct": 985.0,
                "max_size": 4169.0,
                "mean": 647.9760990297758
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 770.0,
                "50_pct": 1040.0,
                "75_pct": 1318.0,
                "max_size": 4169.0,
                "mean": 1071.6286103499324
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 431.0,
                "50_pct": 764.0,
                "75_pct": 1137.0,
                "max_size": 4169.0,
                "mean": 826.837488107457
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.5063594218795372
                },
                "rep1-pr1": {
                    "frip": 0.5006365288385328
                },
                "rep1-pr2": {
                    "frip": 0.5008195445173945
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4848005454015537
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4452686943277679
                }
            }
        }
    }
}
