{
    "general": {
        "date": "2024-10-26 05:34:47",
        "title": "roussos_2024.elderly.GLU",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.3304128755425703,
                "fri_blacklist": 0.01036137622613231,
                "fri_prom": 0.14907562320479936,
                "fri_enh": 0.27949777284558885
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 276066,
                "Np": 0,
                "N_opt": 276066,
                "N_consv": 276066,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 201720,
                "Np": 0,
                "N_opt": 201720,
                "N_consv": 201720,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298329
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 583.0,
                "50_pct": 937.0,
                "75_pct": 1344.0,
                "max_size": 4111.0,
                "mean": 1000.0579025170198
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 841.0,
                "50_pct": 1153.0,
                "75_pct": 1501.0,
                "max_size": 4111.0,
                "mean": 1199.7834126511996
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 651.0,
                "50_pct": 990.0,
                "75_pct": 1380.0,
                "max_size": 4111.0,
                "mean": 1049.5524258691762
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3327795929185597
                },
                "rep1-pr1": {
                    "frip": 0.32535254500671884
                },
                "rep1-pr2": {
                    "frip": 0.3255742861337935
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.32374915436631163
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2836823797880498
                }
            }
        }
    }
}
