{
    "general": {
        "date": "2024-10-25 13:16:10",
        "title": "roussos_2024.elderly.GABA",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.3540995125186104,
                "fri_blacklist": 0.007470978616149237,
                "fri_prom": 0.18214009527104377,
                "fri_enh": 0.27184581240254463
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 238717,
                "Np": 0,
                "N_opt": 238717,
                "N_consv": 238717,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 130798,
                "Np": 0,
                "N_opt": 130798,
                "N_consv": 130798,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298930
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 373.0,
                "50_pct": 672.0,
                "75_pct": 1085.0,
                "max_size": 3634.0,
                "mean": 774.7172481851939
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 802.0,
                "50_pct": 1094.0,
                "75_pct": 1409.0,
                "max_size": 3634.0,
                "mean": 1132.909578128106
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 527.0,
                "50_pct": 817.0,
                "75_pct": 1190.0,
                "max_size": 3634.0,
                "mean": 894.9745221329022
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3193158385260305
                },
                "rep1-pr1": {
                    "frip": 0.311869633125757
                },
                "rep1-pr2": {
                    "frip": 0.31208135036513635
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2998400809769873
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.24657304622077314
                }
            }
        }
    }
}
