{
    "general": {
        "date": "2024-10-25 10:33:39",
        "title": "roussos_2024.elderly.Endothelial",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.37444723749115155,
                "fri_blacklist": 0.016608753702300597,
                "fri_prom": 0.2060901570455721,
                "fri_enh": 0.2551169985031106
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 125040,
                "Np": 0,
                "N_opt": 125040,
                "N_consv": 125040,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 31780,
                "Np": 0,
                "N_opt": 31780,
                "N_consv": 31780,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298479
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 178.0,
                "50_pct": 230.0,
                "75_pct": 331.0,
                "max_size": 2954.0,
                "mean": 321.89389538292477
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 644.0,
                "50_pct": 865.0,
                "75_pct": 1082.0,
                "max_size": 2954.0,
                "mean": 872.1746696035242
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 225.0,
                "50_pct": 330.0,
                "75_pct": 629.0,
                "max_size": 2954.0,
                "mean": 468.53687619961613
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.4092985900056244
                },
                "rep1-pr1": {
                    "frip": 0.4248632187107613
                },
                "rep1-pr2": {
                    "frip": 0.42476156954018246
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.29301896911976205
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.17849036056045628
                }
            }
        }
    }
}
