{
    "general": {
        "date": "2024-10-25 11:42:36",
        "title": "roussos_2024.childhood.Microglia",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.40461456722990097,
                "fri_blacklist": 0.013255111787969391,
                "fri_prom": 0.2248098497281706,
                "fri_enh": 0.24937554151073818
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 189518,
                "Np": 0,
                "N_opt": 189518,
                "N_consv": 189518,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 104824,
                "Np": 0,
                "N_opt": 104824,
                "N_consv": 104824,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297339
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 195.0,
                "50_pct": 384.0,
                "75_pct": 851.0,
                "max_size": 3466.0,
                "mean": 571.3223559640679
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 730.0,
                "50_pct": 1018.0,
                "75_pct": 1305.0,
                "max_size": 3466.0,
                "mean": 1044.7339731359232
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 399.0,
                "50_pct": 694.0,
                "75_pct": 1091.0,
                "max_size": 3466.0,
                "mean": 781.7098692472483
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.37829307895473263
                },
                "rep1-pr1": {
                    "frip": 0.37391653905497657
                },
                "rep1-pr2": {
                    "frip": 0.3746271644073706
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.34763668661206487
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.30202270452683994
                }
            }
        }
    }
}
