{
    "general": {
        "date": "2024-10-25 12:31:08",
        "title": "roussos_2024.childhood.GLU",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.28228625349138353,
                "fri_blacklist": 0.013757832650655333,
                "fri_prom": 0.1213639758051122,
                "fri_enh": 0.26847748950417216
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 194227,
                "Np": 0,
                "N_opt": 194227,
                "N_consv": 194227,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 81401,
                "Np": 0,
                "N_opt": 81401,
                "N_consv": 81401,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297523
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 245.0,
                "50_pct": 473.0,
                "75_pct": 882.0,
                "max_size": 3547.0,
                "mean": 624.7556726706842
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 817.0,
                "50_pct": 1126.0,
                "75_pct": 1431.0,
                "max_size": 3547.0,
                "mean": 1145.5040355769586
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 455.0,
                "50_pct": 722.0,
                "75_pct": 1114.0,
                "max_size": 3547.0,
                "mean": 820.2570239976934
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.2322558623867038
                },
                "rep1-pr1": {
                    "frip": 0.22586799312597153
                },
                "rep1-pr2": {
                    "frip": 0.22588435522915512
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.19782866739859903
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.13495337462118387
                }
            }
        }
    }
}
