{
    "general": {
        "date": "2024-10-25 10:39:15",
        "title": "roussos_2024.childhood.Endothelial",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.3305698311358826,
                "fri_blacklist": 0.015314673336372788,
                "fri_prom": 0.16976963948610987,
                "fri_enh": 0.26059497074481863
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 122782,
                "Np": 0,
                "N_opt": 122782,
                "N_consv": 122782,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 43356,
                "Np": 0,
                "N_opt": 43356,
                "N_consv": 43356,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298244
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 174.0,
                "50_pct": 244.0,
                "75_pct": 430.0,
                "max_size": 2985.0,
                "mean": 388.38165730073365
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 777.0,
                "50_pct": 1024.0,
                "75_pct": 1259.0,
                "max_size": 2985.0,
                "mean": 1027.5022603561215
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 295.0,
                "50_pct": 499.0,
                "75_pct": 907.0,
                "max_size": 2985.0,
                "mean": 631.6358831099021
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.2987052998829177
                },
                "rep1-pr1": {
                    "frip": 0.3075865385650935
                },
                "rep1-pr2": {
                    "frip": 0.3075447417856507
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.21871921333845493
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.148589409978199
                }
            }
        }
    }
}
