{
    "general": {
        "date": "2024-10-26 06:06:49",
        "title": "roussos_2024.childhood.Astrocyte",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.36998741170159805,
                "fri_blacklist": 0.010694485059537262,
                "fri_prom": 0.18908890706302714,
                "fri_enh": 0.27416756466190567
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 262149,
                "Np": 0,
                "N_opt": 262149,
                "N_consv": 262149,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 182949,
                "Np": 0,
                "N_opt": 182949,
                "N_consv": 182949,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297820
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 468.0,
                "50_pct": 862.0,
                "75_pct": 1285.0,
                "max_size": 3832.0,
                "mean": 921.4184070915318
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 841.0,
                "50_pct": 1155.0,
                "75_pct": 1474.0,
                "max_size": 3832.0,
                "mean": 1186.0881229195022
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 601.0,
                "50_pct": 960.0,
                "75_pct": 1342.0,
                "max_size": 3832.0,
                "mean": 1007.6371262144811
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.35108051619313335
                },
                "rep1-pr1": {
                    "frip": 0.344491730529065
                },
                "rep1-pr2": {
                    "frip": 0.3442324336599322
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.34157373844165867
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3109767421018373
                }
            }
        }
    }
}
