{
    "general": {
        "date": "2024-10-25 15:00:06",
        "title": "roussos_2024.adulthood.Oligo",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.347065423126115,
                "fri_blacklist": 0.01961452920598135,
                "fri_prom": 0.18641275982308064,
                "fri_enh": 0.24524855933202908
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 217508,
                "Np": 0,
                "N_opt": 217508,
                "N_consv": 217508,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 133024,
                "Np": 0,
                "N_opt": 133024,
                "N_consv": 133024,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 294607
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 262.0,
                "50_pct": 564.0,
                "75_pct": 1075.0,
                "max_size": 3720.0,
                "mean": 711.2199981670497
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 790.0,
                "50_pct": 1099.0,
                "75_pct": 1396.0,
                "max_size": 3720.0,
                "mean": 1115.9979101515517
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 463.0,
                "50_pct": 813.0,
                "75_pct": 1219.0,
                "max_size": 3720.0,
                "mean": 881.1474842304651
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3245623398281123
                },
                "rep1-pr1": {
                    "frip": 0.3187797853319749
                },
                "rep1-pr2": {
                    "frip": 0.3185038827350457
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3071892395511019
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2761693449077157
                }
            }
        }
    }
}
