{
    "general": {
        "date": "2024-10-25 12:08:39",
        "title": "roussos_2024.adulthood.OPC",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.33813473654141074,
                "fri_blacklist": 0.011563104394698157,
                "fri_prom": 0.17724529354722715,
                "fri_enh": 0.25025744576981684
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 182170,
                "Np": 0,
                "N_opt": 182170,
                "N_consv": 182170,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 97540,
                "Np": 0,
                "N_opt": 97540,
                "N_consv": 97540,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298183
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 205.0,
                "50_pct": 396.0,
                "75_pct": 866.0,
                "max_size": 3629.0,
                "mean": 582.9453925944806
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 782.0,
                "50_pct": 1059.0,
                "75_pct": 1339.0,
                "max_size": 3629.0,
                "mean": 1087.7124154193152
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 431.0,
                "50_pct": 734.0,
                "75_pct": 1121.0,
                "max_size": 3629.0,
                "mean": 814.1953010923862
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3025398497911826
                },
                "rep1-pr1": {
                    "frip": 0.29883957892922103
                },
                "rep1-pr2": {
                    "frip": 0.29872915018200047
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.27158878410087794
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2300521047607521
                }
            }
        }
    }
}
