{
    "general": {
        "date": "2024-10-25 10:58:24",
        "title": "roussos_2024.adulthood.Microglia",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.38312465024007974,
                "fri_blacklist": 0.01781371558632024,
                "fri_prom": 0.2108758982718293,
                "fri_enh": 0.23243338739694325
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 160870,
                "Np": 0,
                "N_opt": 160870,
                "N_consv": 160870,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 81730,
                "Np": 0,
                "N_opt": 81730,
                "N_consv": 81730,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 296840
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 170.0,
                "50_pct": 278.0,
                "75_pct": 668.0,
                "max_size": 3637.0,
                "mean": 477.2583108745452
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 702.0,
                "50_pct": 979.0,
                "75_pct": 1253.0,
                "max_size": 3637.0,
                "mean": 1000.8631102410376
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 330.0,
                "50_pct": 612.0,
                "75_pct": 1013.0,
                "max_size": 3637.0,
                "mean": 710.1435693417045
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3627471263652651
                },
                "rep1-pr1": {
                    "frip": 0.3629626074238789
                },
                "rep1-pr2": {
                    "frip": 0.3628123788944995
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.31875193680913566
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2696580115937848
                }
            }
        }
    }
}
