{
    "general": {
        "date": "2024-10-25 14:07:35",
        "title": "roussos_2024.adulthood.GLU",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.2526612910670636,
                "fri_blacklist": 0.012803030158106467,
                "fri_prom": 0.09971205938087763,
                "fri_enh": 0.2519453997885868
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 233634,
                "Np": 0,
                "N_opt": 233634,
                "N_consv": 233634,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 126856,
                "Np": 0,
                "N_opt": 126856,
                "N_consv": 126856,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297376
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 373.0,
                "50_pct": 661.0,
                "75_pct": 1086.0,
                "max_size": 3987.0,
                "mean": 779.7411996933175
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 786.0,
                "50_pct": 1105.0,
                "75_pct": 1455.0,
                "max_size": 3987.0,
                "mean": 1146.7455303651384
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 526.0,
                "50_pct": 815.0,
                "75_pct": 1213.0,
                "max_size": 3987.0,
                "mean": 907.6471318386879
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.20924816646277133
                },
                "rep1-pr1": {
                    "frip": 0.20111640673417716
                },
                "rep1-pr2": {
                    "frip": 0.20109598558261407
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.19001681019563804
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.14149133045514692
                }
            }
        }
    }
}
