{
    "general": {
        "date": "2024-10-25 13:24:19",
        "title": "roussos_2024.adulthood.GABA",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.2689571937084081,
                "fri_blacklist": 0.010439660922353312,
                "fri_prom": 0.11804321156677398,
                "fri_enh": 0.25202743099768693
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 181121,
                "Np": 0,
                "N_opt": 181121,
                "N_consv": 181121,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 82818,
                "Np": 0,
                "N_opt": 82818,
                "N_consv": 82818,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298274
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 228.0,
                "50_pct": 417.0,
                "75_pct": 804.0,
                "max_size": 3462.0,
                "mean": 581.1954712780866
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 760.0,
                "50_pct": 1083.0,
                "75_pct": 1390.0,
                "max_size": 3462.0,
                "mean": 1098.6163877417953
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 425.0,
                "50_pct": 679.0,
                "75_pct": 1088.0,
                "max_size": 3462.0,
                "mean": 791.0011704882371
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.20789140185994628
                },
                "rep1-pr1": {
                    "frip": 0.2033786581374313
                },
                "rep1-pr2": {
                    "frip": 0.20314636493358723
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.17554339780957134
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1319198323037194
                }
            }
        }
    }
}
