{
    "general": {
        "date": "2024-10-25 10:18:27",
        "title": "roussos_2024.adulthood.Endothelial",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.2739438028090579,
                "fri_blacklist": 0.02917111724723829,
                "fri_prom": 0.13080917674173356,
                "fri_enh": 0.22662415059514057
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 101628,
                "Np": 0,
                "N_opt": 101628,
                "N_consv": 101628,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 12510,
                "Np": 0,
                "N_opt": 12510,
                "N_consv": 12510,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297534
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 164.0,
                "50_pct": 222.0,
                "75_pct": 291.0,
                "max_size": 2685.0,
                "mean": 269.74982691053793
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 537.0,
                "50_pct": 730.0,
                "75_pct": 921.0,
                "max_size": 2685.0,
                "mean": 736.8467625899281
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 216.0,
                "50_pct": 282.0,
                "75_pct": 435.0,
                "max_size": 2685.0,
                "mean": 371.1172413114496
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.368314816459714
                },
                "rep1-pr1": {
                    "frip": 0.4083766589136681
                },
                "rep1-pr2": {
                    "frip": 0.40801238199480094
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.201765139536323
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.06287602796252609
                }
            }
        }
    }
}
