{
    "general": {
        "date": "2024-10-25 14:08:01",
        "title": "roussos_2024.adulthood.Astrocyte",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.27209282998532663,
                "fri_blacklist": 0.02075006673152652,
                "fri_prom": 0.11836700140443292,
                "fri_enh": 0.24382759768864032
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 216105,
                "Np": 0,
                "N_opt": 216105,
                "N_consv": 216105,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 125550,
                "Np": 0,
                "N_opt": 125550,
                "N_consv": 125550,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 294979
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 294.0,
                "50_pct": 584.0,
                "75_pct": 1047.0,
                "max_size": 3711.0,
                "mean": 719.4172466514566
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 776.0,
                "50_pct": 1092.0,
                "75_pct": 1410.0,
                "max_size": 3711.0,
                "mean": 1119.8007327757866
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 492.0,
                "50_pct": 803.0,
                "75_pct": 1202.0,
                "max_size": 3711.0,
                "mean": 885.4111010851207
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.22500246627368375
                },
                "rep1-pr1": {
                    "frip": 0.2185903640891073
                },
                "rep1-pr2": {
                    "frip": 0.21852692445748728
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2055111372524513
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.16985865194428026
                }
            }
        }
    }
}
