{
    "general": {
        "date": "2024-10-26 05:56:57",
        "title": "roussos_2024.adolescence.Oligo",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4239369392577006,
                "fri_blacklist": 0.011137522310142393,
                "fri_prom": 0.24131139487127937,
                "fri_enh": 0.27673631825392586
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 257551,
                "Np": 0,
                "N_opt": 257551,
                "N_consv": 257551,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 179421,
                "Np": 0,
                "N_opt": 179421,
                "N_consv": 179421,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297674
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 379.0,
                "50_pct": 812.0,
                "75_pct": 1273.0,
                "max_size": 3757.0,
                "mean": 880.230967434173
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 832.0,
                "50_pct": 1156.0,
                "75_pct": 1477.0,
                "max_size": 3757.0,
                "mean": 1179.801907246086
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 539.0,
                "50_pct": 942.0,
                "75_pct": 1338.0,
                "max_size": 3757.0,
                "mean": 980.6890674080086
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.42375230140877107
                },
                "rep1-pr1": {
                    "frip": 0.4185098080403705
                },
                "rep1-pr2": {
                    "frip": 0.4188317450373614
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4139365611574527
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.38652281954098794
                }
            }
        }
    }
}
