{
    "general": {
        "date": "2024-10-25 13:47:41",
        "title": "roussos_2024.adolescence.Microglia",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.3616110842466735,
                "fri_blacklist": 0.012193666417338567,
                "fri_prom": 0.18209357464291795,
                "fri_enh": 0.2612966954158329
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 237673,
                "Np": 0,
                "N_opt": 237673,
                "N_consv": 237673,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 161076,
                "Np": 0,
                "N_opt": 161076,
                "N_consv": 161076,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 297392
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 323.0,
                "50_pct": 691.0,
                "75_pct": 1171.0,
                "max_size": 3988.0,
                "mean": 797.8925391402594
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 787.0,
                "50_pct": 1102.0,
                "75_pct": 1435.0,
                "max_size": 3988.0,
                "mean": 1138.2330080210584
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 523.0,
                "50_pct": 869.0,
                "75_pct": 1283.0,
                "max_size": 3988.0,
                "mean": 939.3704627786917
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3332349863284061
                },
                "rep1-pr1": {
                    "frip": 0.32560542219468075
                },
                "rep1-pr2": {
                    "frip": 0.3257587464209355
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3177985643430214
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.28567734138888584
                }
            }
        }
    }
}
