{
    "general": {
        "date": "2024-10-25 10:54:44",
        "title": "roussos_2024.adolescence.GLU",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.2757142605657954,
                "fri_blacklist": 0.01175815166523782,
                "fri_prom": 0.11573766875837523,
                "fri_enh": 0.26950201164883625
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 140051,
                "Np": 0,
                "N_opt": 140051,
                "N_consv": 140051,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 42954,
                "Np": 0,
                "N_opt": 42954,
                "N_consv": 42954,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298636
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 184.0,
                "50_pct": 272.0,
                "75_pct": 513.0,
                "max_size": 3380.0,
                "mean": 418.8492177768253
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 769.0,
                "50_pct": 1033.0,
                "75_pct": 1272.0,
                "max_size": 3380.0,
                "mean": 1030.4000791544443
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 321.0,
                "50_pct": 523.0,
                "75_pct": 882.0,
                "max_size": 3380.0,
                "mean": 638.2243397048218
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.22747080961156646
                },
                "rep1-pr1": {
                    "frip": 0.23159665193997778
                },
                "rep1-pr2": {
                    "frip": 0.23268076977033653
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.16238258063004318
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.09044258994653182
                }
            }
        }
    }
}
