{
    "general": {
        "date": "2024-10-25 12:37:41",
        "title": "roussos_2024.adolescence.GABA",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.28516798773763274,
                "fri_blacklist": 0.007563590336802683,
                "fri_prom": 0.12450839819766277,
                "fri_enh": 0.27758209088771285
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 182946,
                "Np": 0,
                "N_opt": 182946,
                "N_consv": 182946,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 82442,
                "Np": 0,
                "N_opt": 82442,
                "N_consv": 82442,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298912
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 226.0,
                "50_pct": 425.0,
                "75_pct": 847.0,
                "max_size": 3460.0,
                "mean": 602.6638107536667
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 822.0,
                "50_pct": 1153.0,
                "75_pct": 1464.0,
                "max_size": 3460.0,
                "mean": 1164.118337740472
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 438.0,
                "50_pct": 714.0,
                "75_pct": 1148.0,
                "max_size": 3460.0,
                "mean": 826.1346954839133
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.2244550426808837
                },
                "rep1-pr1": {
                    "frip": 0.21910441691394503
                },
                "rep1-pr2": {
                    "frip": 0.21897576355439016
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1876359292834316
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.13559920179761598
                }
            }
        }
    }
}
