{
    "general": {
        "date": "2024-10-25 10:35:52",
        "title": "roussos_2024.adolescence.Endothelial",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.36928688875218374,
                "fri_blacklist": 0.012956007170400938,
                "fri_prom": 0.20018035754057092,
                "fri_enh": 0.26431746720371835
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 135718,
                "Np": 0,
                "N_opt": 135718,
                "N_consv": 135718,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 47753,
                "Np": 0,
                "N_opt": 47753,
                "N_consv": 47753,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298595
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 171.0,
                "50_pct": 244.0,
                "75_pct": 431.0,
                "max_size": 3386.0,
                "mean": 388.9992297258829
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 737.0,
                "50_pct": 992.0,
                "75_pct": 1232.0,
                "max_size": 3386.0,
                "mean": 994.6438338952527
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 264.0,
                "50_pct": 450.0,
                "75_pct": 859.0,
                "max_size": 3386.0,
                "mean": 595.9159875624457
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.34995666133702186
                },
                "rep1-pr1": {
                    "frip": 0.35867256005706294
                },
                "rep1-pr2": {
                    "frip": 0.3587067787164183
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.26908341040545036
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.18639302260291735
                }
            }
        }
    }
}
