{
    "general": {
        "date": "2024-10-25 15:02:49",
        "title": "roussos_2024.KCl.6hr",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.38758845700879063,
                "fri_blacklist": 0.006484705225042399,
                "fri_prom": 0.1710110036092834,
                "fri_enh": 0.28967904003139655
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 247630,
                "Np": 0,
                "N_opt": 247630,
                "N_consv": 247630,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 142036,
                "Np": 0,
                "N_opt": 142036,
                "N_consv": 142036,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298500
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 286.0,
                "50_pct": 483.0,
                "75_pct": 788.0,
                "max_size": 3426.0,
                "mean": 582.751906197655
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 551.0,
                "50_pct": 770.0,
                "75_pct": 1039.0,
                "max_size": 3426.0,
                "mean": 826.4426483426737
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 365.0,
                "50_pct": 570.0,
                "75_pct": 860.0,
                "max_size": 3426.0,
                "mean": 655.38144005169
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.34340360918645996
                },
                "rep1-pr1": {
                    "frip": 0.3380770855059705
                },
                "rep1-pr2": {
                    "frip": 0.33793897758726055
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3318217267828878
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2909045745060616
                }
            }
        }
    }
}
