{
    "general": {
        "date": "2024-10-25 15:06:12",
        "title": "roussos_2024.KCl.1hr",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.39947079732337226,
                "fri_blacklist": 0.0060108193536640726,
                "fri_prom": 0.192483597960503,
                "fri_enh": 0.28082895137326935
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 242619,
                "Np": 0,
                "N_opt": 242619,
                "N_consv": 242619,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 138898,
                "Np": 0,
                "N_opt": 138898,
                "N_consv": 138898,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 298539
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 277.0,
                "50_pct": 475.0,
                "75_pct": 788.0,
                "max_size": 3015.0,
                "mean": 580.1436160769615
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 558.0,
                "50_pct": 780.0,
                "75_pct": 1056.0,
                "max_size": 3015.0,
                "mean": 838.4076012613573
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 366.0,
                "50_pct": 574.0,
                "75_pct": 872.0,
                "max_size": 3015.0,
                "mean": 662.6221318198492
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.35474142586751
                },
                "rep1-pr1": {
                    "frip": 0.3491343936616604
                },
                "rep1-pr2": {
                    "frip": 0.3493906013991853
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3428409737728274
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3042103140191565
                }
            }
        }
    }
}
