{
    "general": {
        "date": "2024-06-10 05:09:29",
        "title": "encode_2024.LV.smooth_muscle_cell.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4578611957366765,
                "fri_blacklist": 0.019976625724080405,
                "fri_prom": 0.20837715741472515,
                "fri_enh": 0.33208071022730934
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 94260,
                "Np": 0,
                "N_opt": 94260,
                "N_consv": 94260,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 47804,
                "Np": 0,
                "N_opt": 47804,
                "N_consv": 47804,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 149785
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 188.0,
                "50_pct": 308.0,
                "75_pct": 589.0,
                "max_size": 2368.0,
                "mean": 424.0380879260273
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 512.0,
                "50_pct": 703.0,
                "75_pct": 912.0,
                "max_size": 2368.0,
                "mean": 730.0970420885282
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 292.0,
                "50_pct": 488.0,
                "75_pct": 748.0,
                "max_size": 2368.0,
                "mean": 550.6920538934861
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.341882950702582
                },
                "rep1-pr1": {
                    "frip": 0.4253870679530039
                },
                "rep1-pr2": {
                    "frip": 0.42078286419326516
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3030333054423514
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2427080123614207
                }
            }
        }
    }
}
