{
    "general": {
        "date": "2024-06-10 05:04:08",
        "title": "encode_2024.LV.smooth_muscle_cell.In",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4641756843364212,
                "fri_blacklist": 0.042721298073445574,
                "fri_prom": 0.21421794809253786,
                "fri_enh": 0.32356500880600053
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 59001,
                "Np": 0,
                "N_opt": 59001,
                "N_consv": 59001,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 28464,
                "Np": 0,
                "N_opt": 28464,
                "N_consv": 28464,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 210342
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 195.0,
                "75_pct": 293.0,
                "max_size": 1695.0,
                "mean": 262.8830713789923
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 386.0,
                "50_pct": 550.0,
                "75_pct": 735.0,
                "max_size": 1695.0,
                "mean": 580.2448707138842
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 236.0,
                "50_pct": 357.0,
                "75_pct": 568.0,
                "max_size": 1695.0,
                "mean": 428.9513737055304
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3946429742918613
                },
                "rep1-pr1": {
                    "frip": 0.5146350345931998
                },
                "rep1-pr2": {
                    "frip": 0.5158508009507453
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2558042225066907
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2044009816966396
                }
            }
        }
    }
}
