{
    "general": {
        "date": "2024-06-10 05:18:50",
        "title": "encode_2024.LV.smooth_muscle_cell.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.48592060899271516,
                "fri_blacklist": 0.02512081154884019,
                "fri_prom": 0.22201235817330625,
                "fri_enh": 0.33951576267188166
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 93299,
                "Np": 0,
                "N_opt": 93299,
                "N_consv": 93299,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 44074,
                "Np": 0,
                "N_opt": 44074,
                "N_consv": 44074,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 183765
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 179.0,
                "50_pct": 273.0,
                "75_pct": 521.0,
                "max_size": 2156.0,
                "mean": 392.362452044731
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 526.0,
                "50_pct": 725.0,
                "75_pct": 935.0,
                "max_size": 2156.0,
                "mean": 747.1384943504107
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 334.0,
                "50_pct": 510.0,
                "75_pct": 758.0,
                "max_size": 2156.0,
                "mean": 575.4063387603297
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.36822630001546125
                },
                "rep1-pr1": {
                    "frip": 0.3716509744404504
                },
                "rep1-pr2": {
                    "frip": 0.3626395969251536
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.31731072786603703
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2437077130396885
                }
            }
        }
    }
}
