{
    "general": {
        "date": "2024-06-10 05:02:27",
        "title": "encode_2024.LV.smooth_muscle_cell.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.494365962345032,
                "fri_blacklist": 0.023884057393951885,
                "fri_prom": 0.23959506690554042,
                "fri_enh": 0.33849891418620975
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 65752,
                "Np": 0,
                "N_opt": 65752,
                "N_consv": 65752,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 32051,
                "Np": 0,
                "N_opt": 32051,
                "N_consv": 32051,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 126352
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 163.0,
                "50_pct": 248.0,
                "75_pct": 468.0,
                "max_size": 2062.0,
                "mean": 359.7419273141699
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 473.0,
                "50_pct": 659.0,
                "75_pct": 853.0,
                "max_size": 2062.0,
                "mean": 676.4134348382265
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 286.0,
                "50_pct": 449.0,
                "75_pct": 691.25,
                "max_size": 2062.0,
                "mean": 514.9809739627692
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3562792705376492
                },
                "rep1-pr1": {
                    "frip": 0.404767172798985
                },
                "rep1-pr2": {
                    "frip": 0.408178298379299
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.301829311746313
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22886905011032338
                }
            }
        }
    }
}
