{
    "general": {
        "date": "2024-06-10 05:58:23",
        "title": "encode_2024.LV.pericyte.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5529183885627762,
                "fri_blacklist": 0.014033394958452046,
                "fri_prom": 0.2809745556048386,
                "fri_enh": 0.3486013911921538
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 144702,
                "Np": 0,
                "N_opt": 144702,
                "N_consv": 144702,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 92054,
                "Np": 0,
                "N_opt": 92054,
                "N_consv": 92054,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 189741
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 276.0,
                "50_pct": 530.0,
                "75_pct": 887.0,
                "max_size": 3012.0,
                "mean": 627.2055380755872
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 614.0,
                "50_pct": 858.0,
                "75_pct": 1131.0,
                "max_size": 3012.0,
                "mean": 899.4712125491559
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 434.0,
                "50_pct": 682.0,
                "75_pct": 996.0,
                "max_size": 3012.0,
                "mean": 748.9566764799381
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.4750307823119904
                },
                "rep1-pr1": {
                    "frip": 0.4608010055261071
                },
                "rep1-pr2": {
                    "frip": 0.46202804342263576
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.45515383827490596
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4094174187976627
                }
            }
        }
    }
}
