{
    "general": {
        "date": "2024-06-10 05:12:07",
        "title": "encode_2024.LV.neuronal.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.44485580128917535,
                "fri_blacklist": 0.029649026944259218,
                "fri_prom": 0.20194163517818775,
                "fri_enh": 0.32504815885011484
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 48660,
                "Np": 0,
                "N_opt": 48660,
                "N_consv": 48660,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 22986,
                "Np": 0,
                "N_opt": 22986,
                "N_consv": 22986,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 276373
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 178.0,
                "75_pct": 263.0,
                "max_size": 1751.0,
                "mean": 245.0996334663661
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 457.0,
                "50_pct": 620.0,
                "75_pct": 788.0,
                "max_size": 1751.0,
                "mean": 635.7405812233534
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 302.0,
                "50_pct": 447.0,
                "75_pct": 652.0,
                "max_size": 1751.0,
                "mean": 498.8478421701603
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3829147217900274
                },
                "rep1-pr1": {
                    "frip": 0.3407312736163592
                },
                "rep1-pr2": {
                    "frip": 0.3569333308636487
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22981542194561755
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.16723268751080486
                }
            }
        }
    }
}