{
    "general": {
        "date": "2024-06-10 05:19:55",
        "title": "encode_2024.LV.neuronal.In",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.47529968521170635,
                "fri_blacklist": 0.04593124150083391,
                "fri_prom": 0.21895776557659993,
                "fri_enh": 0.32274696976005546
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 63784,
                "Np": 0,
                "N_opt": 63784,
                "N_consv": 63784,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 30954,
                "Np": 0,
                "N_opt": 30954,
                "N_consv": 30954,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 230354
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 199.0,
                "75_pct": 301.0,
                "max_size": 1719.0,
                "mean": 269.9092353508079
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 410.25,
                "50_pct": 575.0,
                "75_pct": 766.0,
                "max_size": 1719.0,
                "mean": 605.8932609678878
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 245.0,
                "50_pct": 377.0,
                "75_pct": 594.0,
                "max_size": 1719.0,
                "mean": 447.6901103725072
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.41632165911578034
                },
                "rep1-pr1": {
                    "frip": 0.5076544540540285
                },
                "rep1-pr2": {
                    "frip": 0.5166349940569667
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2734209717978913
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22026715761175691
                }
            }
        }
    }
}
