{
    "general": {
        "date": "2024-06-10 05:33:20",
        "title": "encode_2024.LV.neuronal.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4858031825759495,
                "fri_blacklist": 0.043894058675818116,
                "fri_prom": 0.22709637008908518,
                "fri_enh": 0.3267734110444888
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 83360,
                "Np": 0,
                "N_opt": 83360,
                "N_consv": 83360,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 41752,
                "Np": 0,
                "N_opt": 41752,
                "N_consv": 41752,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 194746
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 151.0,
                "50_pct": 232.0,
                "75_pct": 423.0,
                "max_size": 2090.0,
                "mean": 346.8573937333758
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 501.0,
                "50_pct": 703.0,
                "75_pct": 912.0,
                "max_size": 2090.0,
                "mean": 725.2278693236252
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 299.0,
                "50_pct": 471.5,
                "75_pct": 734.0,
                "max_size": 2090.0,
                "mean": 545.8719889635316
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3666487429432602
                },
                "rep1-pr1": {
                    "frip": 0.4154881223651878
                },
                "rep1-pr2": {
                    "frip": 0.4197446608166378
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2997529414772446
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.24197068101627014
                }
            }
        }
    }
}
