{
    "general": {
        "date": "2024-06-10 05:14:27",
        "title": "encode_2024.LV.neuronal.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.5213036788312105,
                "fri_blacklist": 0.027565547654205064,
                "fri_prom": 0.2509576220363841,
                "fri_enh": 0.34607302722011873
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 83905,
                "Np": 0,
                "N_opt": 83905,
                "N_consv": 83905,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 40689,
                "Np": 0,
                "N_opt": 40689,
                "N_consv": 40689,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 171755
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 166.0,
                "50_pct": 260.0,
                "75_pct": 504.0,
                "max_size": 2366.0,
                "mean": 386.3295391691654
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 549.0,
                "50_pct": 752.0,
                "75_pct": 968.0,
                "max_size": 2366.0,
                "mean": 773.2171840055051
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 318.0,
                "50_pct": 507.0,
                "75_pct": 780.0,
                "max_size": 2366.0,
                "mean": 578.7132352064835
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.39636107193733083
                },
                "rep1-pr1": {
                    "frip": 0.43537491656371285
                },
                "rep1-pr2": {
                    "frip": 0.43892963239514854
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.33605157548758724
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.26398759631071583
                }
            }
        }
    }
}
