{
    "general": {
        "date": "2024-06-10 05:47:45",
        "title": "encode_2024.LV.mesothelial_cell.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4796400917350551,
                "fri_blacklist": 0.04556767058485093,
                "fri_prom": 0.21845788418049752,
                "fri_enh": 0.32793184596821234
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 67837,
                "Np": 0,
                "N_opt": 67837,
                "N_consv": 67837,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 34077,
                "Np": 0,
                "N_opt": 34077,
                "N_consv": 34077,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 222987
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 213.0,
                "75_pct": 326.0,
                "max_size": 2093.0,
                "mean": 288.53612542435206
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 408.0,
                "50_pct": 593.0,
                "75_pct": 812.0,
                "max_size": 2093.0,
                "mean": 629.2300378554451
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 259.0,
                "50_pct": 394.0,
                "75_pct": 627.0,
                "max_size": 2093.0,
                "mean": 472.94924598670343
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.4030778789065309
                },
                "rep1-pr1": {
                    "frip": 0.5116274981421254
                },
                "rep1-pr2": {
                    "frip": 0.4997055368658255
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.26622703627050653
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.20759251416379662
                }
            }
        }
    }
}
