{
    "general": {
        "date": "2024-06-10 05:21:36",
        "title": "encode_2024.LV.mesothelial_cell.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.40358532827454086,
                "fri_blacklist": 0.05903055222221347,
                "fri_prom": 0.16210659488438103,
                "fri_enh": 0.3022585068740608
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 105235,
                "Np": 0,
                "N_opt": 105235,
                "N_consv": 105235,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 44867,
                "Np": 0,
                "N_opt": 44867,
                "N_consv": 44867,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 206703
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 172.0,
                "50_pct": 243.0,
                "75_pct": 425.0,
                "max_size": 1989.0,
                "mean": 353.70732403496805
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 470.0,
                "50_pct": 689.0,
                "75_pct": 925.0,
                "max_size": 1966.0,
                "mean": 717.0697617402545
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 272.0,
                "50_pct": 410.0,
                "75_pct": 673.0,
                "max_size": 1989.0,
                "mean": 505.85624554568346
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.2623005393578489
                },
                "rep1-pr1": {
                    "frip": 0.3021753263519985
                },
                "rep1-pr2": {
                    "frip": 0.2997583611745319
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.21514618032280342
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.15790646684140028
                }
            }
        }
    }
}