{
    "general": {
        "date": "2024-06-10 04:57:16",
        "title": "encode_2024.LV.mast_cell.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.3716883972365263,
                "fri_blacklist": 0.04647238991564818,
                "fri_prom": 0.1682805994757841,
                "fri_enh": 0.27776441051350675
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 21919,
                "Np": 0,
                "N_opt": 21919,
                "N_consv": 21919,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 384,
                "Np": 0,
                "N_opt": 384,
                "N_consv": 384,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299402
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 218.0,
                "75_pct": 304.0,
                "max_size": 1278.0,
                "mean": 244.15399362729707
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 379.75,
                "50_pct": 497.0,
                "75_pct": 617.25,
                "max_size": 979.0,
                "mean": 510.5677083333333
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 249.0,
                "50_pct": 356.0,
                "75_pct": 479.0,
                "max_size": 1278.0,
                "mean": 377.78990829873624
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.6730760507491476
                },
                "rep1-pr1": {
                    "frip": 0.8581069887425943
                },
                "rep1-pr2": {
                    "frip": 0.8595284019864232
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1432422891155188
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.006541851480051987
                }
            }
        }
    }
}
