{
    "general": {
        "date": "2024-06-10 05:16:14",
        "title": "encode_2024.LV.mast_cell.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.40176214191100024,
                "fri_blacklist": 0.0462882413741888,
                "fri_prom": 0.19271712674024208,
                "fri_enh": 0.27797496900679275
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 27553,
                "Np": 0,
                "N_opt": 27553,
                "N_consv": 27553,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 1808,
                "Np": 0,
                "N_opt": 1808,
                "N_consv": 1808,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299480
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 208.0,
                "75_pct": 279.0,
                "max_size": 1246.0,
                "mean": 234.19456391077867
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 370.0,
                "50_pct": 504.0,
                "75_pct": 639.0,
                "max_size": 1246.0,
                "mean": 516.6432522123894
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 236.0,
                "50_pct": 339.0,
                "75_pct": 460.0,
                "max_size": 1246.0,
                "mean": 365.75857438391466
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.5823055308856024
                },
                "rep1-pr1": {
                    "frip": 0.8156502814395398
                },
                "rep1-pr2": {
                    "frip": 0.8196937962056433
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.16642670295928297
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.026789800885693413
                }
            }
        }
    }
}
