{
    "general": {
        "date": "2024-06-10 05:14:24",
        "title": "encode_2024.LV.mast_cell.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4604694294726527,
                "fri_blacklist": 0.01695944600967722,
                "fri_prom": 0.24854439731732714,
                "fri_enh": 0.2866808048018619
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 57514,
                "Np": 0,
                "N_opt": 57514,
                "N_consv": 57514,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 36709,
                "Np": 0,
                "N_opt": 36709,
                "N_consv": 36709,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 205727
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 197.0,
                "75_pct": 307.0,
                "max_size": 1978.0,
                "mean": 287.0376469787631
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 406.0,
                "50_pct": 619.0,
                "75_pct": 859.0,
                "max_size": 1978.0,
                "mean": 653.538042441908
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 256.0,
                "50_pct": 427.0,
                "75_pct": 722.0,
                "max_size": 1978.0,
                "mean": 516.2044371805126
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.4084348395296135
                },
                "rep1-pr1": {
                    "frip": 0.5035604366999449
                },
                "rep1-pr2": {
                    "frip": 0.5136671617565995
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2832084124456422
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2541130106571936
                }
            }
        }
    }
}
