{
    "general": {
        "date": "2024-06-10 05:43:21",
        "title": "encode_2024.LV.macrophage.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.43874956164516254,
                "fri_blacklist": 0.020965947430922015,
                "fri_prom": 0.19369543779585538,
                "fri_enh": 0.31141653978805295
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 126775,
                "Np": 0,
                "N_opt": 126775,
                "N_consv": 126775,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 74720,
                "Np": 0,
                "N_opt": 74720,
                "N_consv": 74720,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 181099
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 229.0,
                "50_pct": 415.0,
                "75_pct": 772.0,
                "max_size": 2722.0,
                "mean": 546.1176870109718
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 566.0,
                "50_pct": 821.0,
                "75_pct": 1111.0,
                "max_size": 2722.0,
                "mean": 862.9538276231264
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 371.0,
                "50_pct": 598.0,
                "75_pct": 934.0,
                "max_size": 2722.0,
                "mean": 685.172265825281
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.33385980674878907
                },
                "rep1-pr1": {
                    "frip": 0.3382421943706317
                },
                "rep1-pr2": {
                    "frip": 0.3437340112007627
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.30907029445427875
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.2632446888509113
                }
            }
        }
    }
}