{
    "general": {
        "date": "2024-06-10 06:47:55",
        "title": "encode_2024.LV.macrophage.In",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4645882576022434,
                "fri_blacklist": 0.015114251751825342,
                "fri_prom": 0.20361698102480558,
                "fri_enh": 0.3281968275709539
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 167347,
                "Np": 0,
                "N_opt": 167347,
                "N_consv": 167347,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 104465,
                "Np": 0,
                "N_opt": 104465,
                "N_consv": 104465,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 232417
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 225.0,
                "50_pct": 370.0,
                "75_pct": 685.0,
                "max_size": 3231.0,
                "mean": 508.2499688060684
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 453.0,
                "50_pct": 693.0,
                "75_pct": 1016.0,
                "max_size": 3231.0,
                "mean": 767.1060355142871
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 322.0,
                "50_pct": 511.0,
                "75_pct": 838.0,
                "max_size": 3231.0,
                "mean": 623.5697144257142
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3720234834304591
                },
                "rep1-pr1": {
                    "frip": 0.3618812774785187
                },
                "rep1-pr2": {
                    "frip": 0.36298829633202007
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.349882180592432
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.30903699688411906
                }
            }
        }
    }
}