{
    "general": {
        "date": "2024-06-10 06:09:09",
        "title": "encode_2024.LV.macrophage.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4772072191295928,
                "fri_blacklist": 0.020002420745956633,
                "fri_prom": 0.22000769463092304,
                "fri_enh": 0.31973317417774894
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 142164,
                "Np": 0,
                "N_opt": 142164,
                "N_consv": 142164,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 88727,
                "Np": 0,
                "N_opt": 88727,
                "N_consv": 88727,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 201379
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 228.0,
                "50_pct": 408.0,
                "75_pct": 759.0,
                "max_size": 2695.0,
                "mean": 540.705406224085
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 528.0,
                "50_pct": 782.0,
                "75_pct": 1081.0,
                "max_size": 2695.0,
                "mean": 832.9209823390851
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 362.0,
                "50_pct": 581.0,
                "75_pct": 917.0,
                "max_size": 2695.0,
                "mean": 675.8812709265355
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3800914937149049
                },
                "rep1-pr1": {
                    "frip": 0.38186779385857733
                },
                "rep1-pr2": {
                    "frip": 0.3736108554241416
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3568697265244967
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.31486089063796974
                }
            }
        }
    }
}
