{
    "general": {
        "date": "2024-06-10 05:21:45",
        "title": "encode_2024.LV.lymphocyte.In",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.39788827310436314,
                "fri_blacklist": 0.0215720883011002,
                "fri_prom": 0.20292973873615822,
                "fri_enh": 0.27369023404851295
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 74628,
                "Np": 0,
                "N_opt": 74628,
                "N_consv": 74628,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 37947,
                "Np": 0,
                "N_opt": 37947,
                "N_consv": 37947,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 166723
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 162.0,
                "50_pct": 224.0,
                "75_pct": 425.0,
                "max_size": 2330.0,
                "mean": 363.93739915908424
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 547.0,
                "50_pct": 797.0,
                "75_pct": 1023.0,
                "max_size": 2330.0,
                "mean": 800.5050992173294
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 279.0,
                "50_pct": 469.0,
                "75_pct": 821.0,
                "max_size": 2330.0,
                "mean": 575.4839604438013
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.2705581432702784
                },
                "rep1-pr1": {
                    "frip": 0.31571039587288924
                },
                "rep1-pr2": {
                    "frip": 0.30080788632786076
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22826148865226864
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.19232315121624433
                }
            }
        }
    }
}