{
    "general": {
        "date": "2024-06-10 05:26:06",
        "title": "encode_2024.LV.lymphocyte.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4014823257851013,
                "fri_blacklist": 0.024796220000561215,
                "fri_prom": 0.20319629203378556,
                "fri_enh": 0.27377332412561567
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 70032,
                "Np": 0,
                "N_opt": 70032,
                "N_consv": 70032,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 37480,
                "Np": 0,
                "N_opt": 37480,
                "N_consv": 37480,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 201271
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 159.0,
                "50_pct": 217.0,
                "75_pct": 390.0,
                "max_size": 2343.0,
                "mean": 351.5720297509328
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 597.0,
                "50_pct": 833.0,
                "75_pct": 1057.0,
                "max_size": 2343.0,
                "mean": 838.9546691568837
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 338.0,
                "50_pct": 560.0,
                "75_pct": 883.0,
                "max_size": 2343.0,
                "mean": 638.3835103952479
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.2812068937566583
                },
                "rep1-pr1": {
                    "frip": 0.26899114428910165
                },
                "rep1-pr2": {
                    "frip": 0.2645444425621589
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22874650405457075
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.1914542384267173
                }
            }
        }
    }
}
