{
    "general": {
        "date": "2024-06-10 05:20:00",
        "title": "encode_2024.LV.lymphocyte.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4199072929638332,
                "fri_blacklist": 0.031572463884044985,
                "fri_prom": 0.21486754773787917,
                "fri_enh": 0.2746652374934007
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 44872,
                "Np": 0,
                "N_opt": 44872,
                "N_consv": 44872,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 22037,
                "Np": 0,
                "N_opt": 22037,
                "N_consv": 22037,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 166413
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 150.0,
                "50_pct": 184.0,
                "75_pct": 275.0,
                "max_size": 1583.0,
                "mean": 252.9069844303029
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 387.0,
                "50_pct": 560.0,
                "75_pct": 749.0,
                "max_size": 1583.0,
                "mean": 583.6550800925716
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 214.0,
                "50_pct": 333.5,
                "75_pct": 571.0,
                "max_size": 1583.0,
                "mean": 417.4252986272063
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.351174603928231
                },
                "rep1-pr1": {
                    "frip": 0.5314813610649227
                },
                "rep1-pr2": {
                    "frip": 0.5300869683689458
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.22307849907907087
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.18376445063959287
                }
            }
        }
    }
}
