{
    "general": {
        "date": "2024-06-10 06:11:48",
        "title": "encode_2024.LV.fibroblast.In",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.47484645580261753,
                "fri_blacklist": 0.01833385504946183,
                "fri_prom": 0.20161829276336107,
                "fri_enh": 0.35800854759464434
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 177846,
                "Np": 0,
                "N_opt": 177846,
                "N_consv": 177846,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 97532,
                "Np": 0,
                "N_opt": 97532,
                "N_consv": 97532,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 249254
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 233.0,
                "50_pct": 422.0,
                "75_pct": 761.0,
                "max_size": 3051.0,
                "mean": 542.388471198055
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 574.0,
                "50_pct": 814.0,
                "75_pct": 1091.0,
                "max_size": 3051.0,
                "mean": 855.6861337817331
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 371.0,
                "50_pct": 592.0,
                "75_pct": 901.0,
                "max_size": 3051.0,
                "mean": 672.762648583606
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.36761999819929414
                },
                "rep1-pr1": {
                    "frip": 0.35900666994004277
                },
                "rep1-pr2": {
                    "frip": 0.3597116933858609
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3413432768239737
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.28483197163678925
                }
            }
        }
    }
}
