{
    "general": {
        "date": "2024-06-10 08:49:08",
        "title": "encode_2024.LV.fibroblast.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4615817155141905,
                "fri_blacklist": 0.016168635328373423,
                "fri_prom": 0.19213355798430712,
                "fri_enh": 0.3565961090153047
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 255473,
                "Np": 0,
                "N_opt": 255473,
                "N_consv": 255473,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 170270,
                "Np": 0,
                "N_opt": 170270,
                "N_consv": 170270,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299466
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 345.0,
                "50_pct": 637.0,
                "75_pct": 1032.0,
                "max_size": 3364.0,
                "mean": 734.8394275143088
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 649.0,
                "50_pct": 935.0,
                "75_pct": 1252.0,
                "max_size": 3364.0,
                "mean": 981.5564397721266
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 454.0,
                "50_pct": 741.0,
                "75_pct": 1103.0,
                "max_size": 3364.0,
                "mean": 819.9008036074263
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.38380750686778753
                },
                "rep1-pr1": {
                    "frip": 0.37912174659867365
                },
                "rep1-pr2": {
                    "frip": 0.3790966657019315
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.37150585242787143
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.33426291115806006
                }
            }
        }
    }
}
