{
    "general": {
        "date": "2024-06-10 08:14:43",
        "title": "encode_2024.LV.fibroblast.H",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.557702441349941,
                "fri_blacklist": 0.009189020961961673,
                "fri_prom": 0.24998527193029194,
                "fri_enh": 0.3892509395279318
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 259967,
                "Np": 0,
                "N_opt": 259967,
                "N_consv": 259967,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 187364,
                "Np": 0,
                "N_opt": 187364,
                "N_consv": 187364,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299622
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 366.0,
                "50_pct": 679.0,
                "75_pct": 1062.0,
                "max_size": 4589.0,
                "mean": 761.0519888392708
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 648.0,
                "50_pct": 929.0,
                "75_pct": 1240.0,
                "max_size": 4589.0,
                "mean": 975.8767692833202
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 477.0,
                "50_pct": 774.0,
                "75_pct": 1124.0,
                "max_size": 4589.0,
                "mean": 841.04273619344
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.49695824170750835
                },
                "rep1-pr1": {
                    "frip": 0.48632332007077705
                },
                "rep1-pr2": {
                    "frip": 0.4923183200414865
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4850669490364678
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.4518108325157562
                }
            }
        }
    }
}
