{
    "general": {
        "date": "2024-06-10 07:09:13",
        "title": "encode_2024.LV.endothelial_cell.NI",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.42950294398063543,
                "fri_blacklist": 0.024552387941818427,
                "fri_prom": 0.19051795579421577,
                "fri_enh": 0.3185870676084944
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 180043,
                "Np": 0,
                "N_opt": 180043,
                "N_consv": 180043,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 118227,
                "Np": 0,
                "N_opt": 118227,
                "N_consv": 118227,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 260599
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 262.0,
                "50_pct": 487.0,
                "75_pct": 866.0,
                "max_size": 3461.0,
                "mean": 612.034094528375
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 615.0,
                "50_pct": 871.0,
                "75_pct": 1162.0,
                "max_size": 3461.0,
                "mean": 916.8309354039263
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 445.0,
                "50_pct": 703.0,
                "75_pct": 1023.0,
                "max_size": 3461.0,
                "mean": 774.2487072532673
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.3498825811912438
                },
                "rep1-pr1": {
                    "frip": 0.3422941264783809
                },
                "rep1-pr2": {
                    "frip": 0.3449004960855825
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3274963514316952
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.29677125397028076
                }
            }
        }
    }
}
