{
    "general": {
        "date": "2024-06-10 06:01:14",
        "title": "encode_2024.LV.endothelial_cell.In",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4711420545820397,
                "fri_blacklist": 0.03528749847099446,
                "fri_prom": 0.2112217751001685,
                "fri_enh": 0.3321961001476253
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 144384,
                "Np": 0,
                "N_opt": 144384,
                "N_consv": 144384,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 83818,
                "Np": 0,
                "N_opt": 83818,
                "N_consv": 83818,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 213621
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 230.0,
                "50_pct": 422.0,
                "75_pct": 784.0,
                "max_size": 2966.0,
                "mean": 554.6569859704804
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 591.0,
                "50_pct": 845.0,
                "75_pct": 1129.0,
                "max_size": 2966.0,
                "mean": 887.0382972631177
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 396.0,
                "50_pct": 629.0,
                "75_pct": 957.0,
                "max_size": 2966.0,
                "mean": 711.8356535350177
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.36864447319080335
                },
                "rep1-pr1": {
                    "frip": 0.3620041648619203
                },
                "rep1-pr2": {
                    "frip": 0.3632802911931722
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.34226792408104395
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.29418181862563353
                }
            }
        }
    }
}
