{
    "general": {
        "date": "2024-06-10 08:04:19",
        "title": "encode_2024.LV.endothelial_cell.I",
        "description": "No description",
        "pipeline_ver": "v1.10.0",
        "pipeline_type": "atac",
        "genome": "hg38",
        "aligner": "bowtie2",
        "seq_endedness": {
            "rep1": {
                "paired_end": true
            }
        },
        "peak_caller": "macs2"
    },
    "align": {
        "frac_reads_in_annot": {
            "rep1": {
                "fri_dhs": 0.4401512055556692,
                "fri_blacklist": 0.02936580114425569,
                "fri_prom": 0.19453713613379872,
                "fri_enh": 0.3191874514839348
            }
        }
    },
    "replication": {
        "reproducibility": {
            "overlap": {
                "Nt": 0,
                "N1": 210368,
                "Np": 0,
                "N_opt": 210368,
                "N_consv": 210368,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            },
            "idr": {
                "Nt": 0,
                "N1": 136007,
                "Np": 0,
                "N_opt": 136007,
                "N_consv": 136007,
                "opt_set": "rep1-pr1_vs_rep1-pr2",
                "consv_set": "rep1-pr1_vs_rep1-pr2",
                "rescue_ratio": 0.0,
                "self_consistency_ratio": 1.0,
                "reproducibility": "pass"
            }
        },
        "num_peaks": {
            "rep1": {
                "num_peaks": 299387
            }
        }
    },
    "peak_stat": {
        "peak_region_size": {
            "rep1": {
                "min_size": 150.0,
                "25_pct": 268.0,
                "50_pct": 485.0,
                "75_pct": 872.0,
                "max_size": 3569.0,
                "mean": 623.6089977186718
            },
            "idr_opt": {
                "min_size": 150.0,
                "25_pct": 596.0,
                "50_pct": 872.0,
                "75_pct": 1196.0,
                "max_size": 3569.0,
                "mean": 928.6652598763299
            },
            "overlap_opt": {
                "min_size": 150.0,
                "25_pct": 427.0,
                "50_pct": 685.0,
                "75_pct": 1036.0,
                "max_size": 3569.0,
                "mean": 776.7498431320353
            }
        }
    },
    "peak_enrich": {
        "frac_reads_in_peaks": {
            "macs2": {
                "rep1": {
                    "frip": 0.36144350069743864
                },
                "rep1-pr1": {
                    "frip": 0.3511509219642218
                },
                "rep1-pr2": {
                    "frip": 0.3460610527123514
                }
            },
            "overlap": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.3406395498170043
                }
            },
            "idr": {
                "rep1-pr1_vs_rep1-pr2": {
                    "frip": 0.31129433064616613
                }
            }
        }
    }
}
